species:   Scscl
pid:       PID1664
parent:    Ssc-milR-140
paralog:   
locus:     NW_001820830.1:1878056-1878125
matures:   ['UAAACCAACUAGACGACCGAGAG', 'AAUGGUCACAGUUUGUUGUGUUUGCU']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820830.1:1878056-1878125

62 out of bounds
71 alignments
2 proper strand
2 stranded perfect matches

  **********************                *************************     
UAAACCAACUAGACGACCGAGAGUGUUUUCGAGUUGUAGCUCGAAUGGUCACAGUUUGUUGUGUUUGCUU
(((((((((.(((((((((........(((((((....))))))))))))...)))))))).)))))...
UAAACCAACUAGACGACCGAGAG----------------------------------------------- l=23 a=0 c
-------------------------------------------AAUGGUCACAGUUUGUUGUGUUUGCU- l=26 a=0 c*
----CCAACUAGACGACCGAGAGU---------------------------------------------- l=20 a=1 ma
------------------------------------------GAAUGGUCACAGUUUGUUGUGUU----- l=23 a=0 ma*

----CCAACUAGACGACCGAGAGU---------------------------------------------- l=20 a=1 (ma)
---ACCAACUAGACGACCGAGA------------------------------------------------ l=19 a=1 

mb-00011
ax-1011011
ku-01
ss-100111011100
fn-001
